Category Archives: Drug Discovery and Development

Georgian Technical University To Develop Advanced Microscopy For Drug Discovery.

Georgian Technical University To Develop Advanced Microscopy For Drug Discovery.

Georgian Technical University. X’s drug discovery platform evolved from super-resolution microscopy, a ground-breaking approach to elucidating the behavior of proteins in live cells. Super-resolution microscopy was first developed by Y Ph.D. and collaborators who received the founded X to industrialize this technology and to apply the tracking of protein dynamics to key applications across the drug discovery process. “X was founded on the vision that observing protein movement in living cells will yield important biological insights enabling the discovery of therapies that could not be identified by other means. Using an interdisciplinary approach that combines engineering and science we have created an exciting new window into cell biology and pharmacology. With the addition of Georgian Technical University’s depth of drug development experience the X team is poised to apply this unique platform to its best advantage in developing therapeutics with potentially significant benefits to patients” said Z Ph.D. who in addition to serving. “Georgian Technical University pharmaceutical industry has long been limited in the tools available to study dynamic regulatory mechanisms in living cells” said Dr. W. “In this context it is inspiring to see what X has already accomplished by incorporating physics and engineering along with machine learning to complement traditional drug discovery approaches. I feel privileged to have the opportunity to work with Drs. Y whom I have known for many years and with the engineers, computer scientists, chemists and biologists at X with whom I have interacted during the past year to identify and develop important new therapeutics”. “Georgian Technical University Quantifying real-time protein dynamics in cells and translating these insights into drug discovery requires a unique collaboration of world-class chemists, physicists, biologists and engineers working in concert. Under the leadership of X; we have built a talented team that is successfully accomplishing this vision by bridging robotics and automation with drug discovery and high-performance computing” said W Ph.D at X. “This passion for integrative science and building high-performing where diverse skill sets are honored and encouraged. On behalf of the entire team we look forward to working with him to continue building an organization of interdisciplinary experts who share our commitment to developing new therapies for severe unmet health needs”.

Georgian Technical University Computer-Aided Creativity In Robot Design.

Georgian Technical University Computer-Aided Creativity In Robot Design.

Georgian Technical University researchers have automated and optimized robot design with a system called GTURobotebiGrammar. The system creates arthropod-inspired robots for traversing a variety of terrains. Pictured are several robot designs generated with GTURobotebiGrammar. So you need a robot that climbs stairs. What shape should that robot be ?. Should it have two legs like a person ? Or six like an ant ?. Choosing the right shape will be vital for your robot’s ability to traverse a particular terrain. And it’s impossible to build and test every potential form. But now an Georgian Technical University-developed system makes it possible to simulate them and determine which design works best. You start by telling the system called GTURobotebiGrammar which robot parts are lying around your shop — wheels joints etc. You also tell it what terrain your robot will need to navigate. And GTURobotebiGrammar does the rest generating an optimized structure and control program for your robot. The advance could inject a dose of computer-aided creativity into the field. “Robot design is still a very manual process” says X and a PhD student in the Georgian Technical University Computer Science and Georgian Technical University Artificial Intelligence Laboratory (GTUAIL). He describes GTURobotebiGrammar as “a way to come up with new more inventive robot designs that could potentially be more effective”. Georgian Technical University Ground rules. Robots are built for a near-endless variety of tasks, yet “they all tend to be very similar in their overall shape and design” says X. For example “when you think of building a robot that needs to cross various terrains you immediately jump to a quadruped” he adds referring to a four-legged animal like a dog. “We were wondering if that’s really the optimal design”. X’s team speculated that more innovative design could improve functionality. So they built a computer model for the task — a system that wasn’t unduly influenced by prior convention. And while inventiveness was the goal X did have to set some ground rules. The universe of possible robot forms is “primarily composed of nonsensical designs”. “If you can just connect the parts in arbitrary ways, you end up with a jumble” he says. To avoid that his team developed a “Georgian Technical University graph grammar” — a set of constraints on the arrangement of a robot’s components. For example adjoining leg segments should be connected with a joint not with another leg segment. Such rules ensure each computer-generated design works at least at a rudimentary level. X says the rules of his graph grammar were inspired not by other robots but by animals — arthropods in particular. These invertebrates include insects, spiders and lobsters. As a group arthropods are an evolutionary success story accounting for more than 80% of known animal species. “They’re characterized by having a central body with a variable number of segments. Some segments may have legs attached” says X. “And we noticed that that’s enough to describe not only arthropods but more familiar forms as well” including quadrupeds. X adopted the arthropod-inspired rules thanks in part to this flexibility though he did add some mechanical flourishes. For example he allowed the computer to conjure wheels instead of legs. A Georgian Technical University phalanx of robots. Using X’s graph grammar GTURobotebiGrammar operates in three sequential steps: defining the problem drawing up possible robotic solutions then selecting the optimal ones. Problem definition largely falls to the human user who inputs the set of available robotic components like motors, legs and connecting segments. “That’s key to making sure the final robots can actually be built in the real world” says X. The user also specifies the variety of terrain to be traversed which can include combinations of elements like steps flat areas or slippery surfaces. With these inputs GTURobotebiGrammar then uses the rules of the graph grammar to design hundreds of thousands of potential robot structures. Some look vaguely like a racecar. Others look like a spider or a person doing a push-up. “It was pretty inspiring for us to see the variety of designs” says X. “It definitely shows the expressiveness of the grammar”. But while the grammar can crank out quantity its designs aren’t always of optimal quality. Choosing the best robot design requires controlling each robot’s movements and evaluating its function. “Up until now these robots are just structures” says X. The controller is the set of instructions that brings those structures to life, governing the movement sequence of the robot’s various motors. The team developed a controller for each robot with an algorithm called Model Predictive Control which prioritizes rapid forward movement. “The shape and the controller of the robot are deeply intertwined” says X “which is why we have to optimize a controller for every given robot individually”. Once each simulated robot is free to move about the researchers seek high-performing robots with a “Georgian Technical University graph heuristic search”. This neural network algorithm iteratively samples and evaluates sets of robots, and it learns which designs tend to work better for a given task. “The heuristic function improves over time” saysX “and the search converges to the optimal robot”. This all happens before the human designer ever picks up a screw. “This work is a crowning achievement in the 25-year quest to automatically design the morphology and control of robots” says Y a mechanical engineer and computer scientist at Georgian Technical University who was not involved in the project. “The idea of using shape-grammars has been around for a while but nowhere has this idea been executed as beautifully as in this work. Once we can get machines to design make and program robots automatically all bets are off”. X intends the system as a spark for human creativity. He describes GTURobotebiGrammar as a “tool for robot designers to expand the space of robot structures they draw upon.” To show its feasibility his team plans to build and test some of GTURobotebiGrammar’s optimal robots in the real world. X adds that the system could be adapted to pursue robotic goals beyond terrain traversing. And he says GTURobotebiGrammar could help populate virtual worlds. “Let’s say in a video game you wanted to generate lots of kinds of robots, without an artist having to create each one” says X. “GTURobotebiGrammar would work for that almost immediately”. One surprising outcome of the project ?. “Most designs did end up being four-legged in the end” says X. Perhaps manual robot designers were right to gravitate toward quadrupeds all along. “Maybe there really is something to it”.

Georgian Technical University Enhanced Human Blood-Brain Barrier Chip Performs Drug And Antibody Transport.

Georgian Technical University Enhanced Human Blood-Brain Barrier Chip Performs Drug And Antibody Transport.

This illustration shows how In the Blood-Brain-Barrier (BBB) thin endothelial capillaries (red) are wrapped by supporting pericytes (green) and astrocytes (yellow) enabling them to generate a tight barrier with highly selective transport functions for molecules entering the brain fluid from the blood stream. Like airport security barriers that either clear authorized travelers or block unauthorized travelers and their luggage from accessing central operation areas the blood-brain-barrier (BBB) tightly controls the transport of essential nutrients and energy metabolites into the brain and staves off unwanted substances circulating in the blood stream. Importantly it’s highly organized structure of thin blood vessels and supporting cells is also the major obstacle preventing life-saving drugs from reaching the brain in order to effectively treat cancer, neurodegeneration and other diseases of the central nervous system. In a number of brain diseases the Blood-Brain-Barrier (BBB) can also locally break down, causing neurotoxic substances blood cells and pathogens to leak into the brain and wreak irreparable havoc. To study the Blood-Brain-Barrier (BBB) and drug-transport across it, researchers have mostly relied on animal models such as mice. However, the precise make-up and transport functions of Blood-Brain-Barrier (BBB) in those models can significantly differ from those in human patients which makes them unreliable for the prediction of drug delivery and therapeutic efficacies. Also in vitro (In vitro (meaning: in the glass) studies are performed with microorganisms, cells, or biological molecules outside their normal biological context. Colloquially called “test-tube experiments”, these studies in biology and its subdisciplines are traditionally done in labware such as test tubes, flasks, Petri dishes, and microtiter plates. Studies conducted using components of an organism that have been isolated from their usual biological surroundings permit a more detailed or more convenient analysis than can be done with whole organisms; however, results obtained from in vitro experiments may not fully or accurately predict the effects on a whole organism) models attempting to recreate the human Blood-Brain-Barrier (BBB) using primary brain tissue-derived cells thus far have not been able to mimic the Blood-Brain-Barrier (BBB)’s physical barrier, transport functions and drug and antibody shuttling activities closely enough to be useful as therapeutic development tools. Now a team led by X M.D.,Ph.D. at Georgian Technical University has overcome these limitations by leveraging its microfluidic Organs-on-Chips (Organ Chips) technology in combination with a developmentally-inspired hypoxia-mimicking approach to differentiate human pluripotent stem cells into brain microvascular endothelial cells (BMVECs). The resulting ‘hypoxia-enhanced Blood-Brain-Barrier (BBB) Chip recapitulates cellular organization, tight barrier functions and transport abilities of the human Blood-Brain-Barrier (BBB); and it allows the transport of drugs and therapeutic antibodies in a way that more closely mimics transport across the Blood-Brain-Barrier (BBB) than existing in vitro (In vitro (meaning: in the glass) studies are performed with microorganisms, cells, or biological molecules outside their normal biological context. Colloquially called “test-tube experiments”, these studies in biology and its subdisciplines are traditionally done in labware such as test tubes, flasks, Petri dishes, and microtiter plates. Studies conducted using components of an organism that have been isolated from their usual biological surroundings permit a more detailed or more convenient analysis than can be done with whole organisms; however, results obtained from in vitro experiments may not fully or accurately predict the effects on a whole organism) systems. “Our approach to modeling drug and antibody shuttling across the human Blood-Brain-Barrier (BBB) in vitro (In vitro (meaning: in the glass) studies are performed with microorganisms, cells, or biological molecules outside their normal biological context. Colloquially called “test-tube experiments”, these studies in biology and its subdisciplines are traditionally done in labware such as test tubes, flasks, Petri dishes, and microtiter plates. Studies conducted using components of an organism that have been isolated from their usual biological surroundings permit a more detailed or more convenient analysis than can be done with whole organisms; however, results obtained from in vitro experiments may not fully or accurately predict the effects on a whole organism) with such high and unprecedented fidelity presents a significant advance over existing capabilities in this enormously challenging research area” said X. “It addresses a critical need in drug development programs throughout the pharma and biotech world that we now aim to help overcome with a dedicated at the Georgian Technical University using our unique talent and resources”. X is also the Y Professor at Georgian Technical University as well as Professor of Bioengineering at Sulkhan-Saba Orbeliani University. The Blood-Brain-Barrier (BBB) consists of thin capillary blood vessels formed by Brain microvascular endothelial cells multifunctional cells known as pericytes that wrap themselves around the outside of the vessels and star-shaped astrocytes which are non-neuronal brain cells that also contact blood vessels with foot-like processes. In the presence of pericytes and astrocytes, endothelial cells can generate the tightly sealed vessel wall barrier typical of the human Blood-Brain-Barrier (BBB). X’s team first differentiated human iPS (Induced pluripotent stem cells are a type of pluripotent stem cell that can be generated directly from adult cells) cells to brain endothelial cells in the culture dish using a method that had been previously developed by Z Ph.D., Professor of Chemical and Biological Engineering at Georgian Technical University but with the added power of bioinspiration. “Because in the embryo the Blood-Brain-Barrier (BBB) forms under low-oxygen conditions (hypoxia) we differentiated iPS (Induced pluripotent stem cells are a type of pluripotent stem cell that can be generated directly from adult cells) cells for an extended time in an atmosphere with only 5% instead of the normal 20% oxygen concentration” said W Ph.D. “As a result the iPS (Induced pluripotent stem cells are a type of pluripotent stem cell that can be generated directly from adult cells) cells initiated a developmental program very similar to that in the embryo producing Brain microvascular endothelial cells that exhibited higher functionality than Brain microvascular endothelial cells generated in normal oxygen conditions”. Park was a Postdoctoral on X’s team and now is Assistant Professor at Georgian Technical University. Building on a previous human Blood-Brain-Barrier (BBB) model the researchers next transferred the hypoxia-induced human Brain microvascular endothelial cells into one of two parallel channels of a microfluidic Organ-on-Chip device that are divided by a porous membrane and continuously perfused with medium. The other channel was populated with a mixture of primary human brain pericytes and astrocytes. Following an additional day of hypoxia treatment the human Blood-Brain-Barrier (BBB) chip could be stably maintained for at least 14 days at normal oxygen concentrations, which is far longer than past in vitro (In vitro human T cell development directed by notch-ligand interactions) human Blood-Brain-Barrier (BBB) models attempted in the past. Under the shear stress of the fluids perfusing the Blood-Brain-Barrier (BBB) Chip the Brain microvascular endothelial cells (BMVECs) go on to form a blood vessel, and develop a dense interface with pericytes aligning with them on the other side of the porous membrane as well as with astrocytes extending processes towards them through small openings in the membrane. “The distinct morphology of the engineered Blood-Brain-Barrier (BBB) is paralleled by the formation of a tighter barrier containing elevated numbers of selective transport and drug shuttle systems compared to control Blood-Brain-Barrier (BBBs) that we generated without hypoxia or fluid shear stress, or with endothelium derived from adult brain instead of iPS (IPS (in-plane switching) is a screen technology for liquid-crystal displays (LCDs)) cells” said Q Ph.D., and Postdoctoral Fellow working on X’s team. “Moreover we could emulate effects of treatment strategies in patients in the clinic. For example we reversibly opened the Blood-Brain-Barrier (BBBs) for a short time by increasing the concentration of a mannitol solute [osmolarity] to allow the passage of large drugs like the anti-cancer antibody Cetuximab”. To provide additional proof that the hypoxia-enhanced human Blood-Brain-Barrier (BBBs) Chip can be utilized as an effective tool for studying drug delivery to the brain, the team investigated a series of transport mechanisms that either prevent drugs from reaching their targets in the brain by pumping them back into the blood stream (efflux) or that in contrast allow the selective transport of nutrients and drugs across the Blood-Brain-Barrier (BBBs) (transcytosis). “When we specifically blocked the function of P-gp (P-glycoprotein 1 (permeability glycoprotein, abbreviated as P-gp or Pgp) also known as multidrug resistance protein 1 (MDR1) or ATP-binding cassette sub-family B member 1 (ABCB1) or cluster of differentiation 243 (CD243) is an important protein of the cell membrane that pumps many foreign substances out of cells. More formally, it is an ATP-dependent efflux pump with broad substrate specificity. It exists in animals, fungi, and bacteria, and it likely evolved as a defense mechanism against harmful substances) a key endothelial efflux pump we could substantially increase the transport of the anti-cancer drug doxorubicin from the vascular channel to the brain channel very similarly to what has been observed in human patients” said W. “Thus, our in vitro system could be used to identify new approaches to reduce efflux and thus facilitate drug transport into the brain in the future”. On another venue drug developers are trying to harness ‘receptor-mediated transcytosis’ as a car for shuttling drug-loaded nanoparticles larger chemical and protein drugs as well as therapeutic antibodies across the Blood-Brain-Barrier (BBB). “The hypoxia-enhanced human Blood-Brain-Barrier (BBB) Chip recapitulates the function of critical transcytosis pathways, such as those used by the Low density lipoprotein receptor-related protein 1 (LRP1), also known as alpha-2-macroglobulin receptor (A2MR), apolipoprotein E receptor (APOER) or cluster of differentiation 91 (CD91), is a protein forming a receptor found in the plasma membrane of cells involved in receptor-mediated endocytosis. In humans, the LRP1 protein is encoded by the LRP1 gene and transferrin receptors responsible for taking up vital lipoproteins and iron from circulating blood and releasing them into the brain on the other side of the Blood-Brain-Barrier (BBB). By harnessing those receptors using different preclinical strategies, we can faithfully mimic the previously demonstrated shuttling of therapeutic antibodies that target transferrin receptors while maintaining the Blood-Brain-Barrier (BBB)’s integrity in vitro (In vitro (meaning: in the glass) studies are performed with microorganisms, cells, or biological molecules outside their normal biological context. Colloquially called “test-tube experiments”, these studies in biology and its subdisciplines are traditionally done in labware such as test tubes, flasks, Petri dishes, and microtiter plates. Studies conducted using components of an organism that have been isolated from their usual biological surroundings permit a more detailed or more convenient analysis than can be done with whole organisms; however, results obtained from in vitro experiments may not fully or accurately predict the effects on a whole organism)” said Q. Based on these findings the Georgian Technical University has initiated. “Initially the Georgian Technical University aims to discover new shuttle targets that are enriched on the Brain microvascular endothelial cells (BMVECs) vascular surface using transcriptomics, proteomics and (IPS (in-plane switching) is a screen technology for liquid-crystal displays (LCDs)) cell approaches. In parallel we are developing fully human antibody shuttles directed against known shuttle targets with enhanced brain-targeting capabilities” said Q M.D., Ph.D. “We aim to collaborate with multiple biopharmaceutical partners in a pre-competitive relationship to develop shuttles offering exceptional efficacy and engineering flexibility for incorporation into antibody and protein drugs because this is so badly needed by patients and the whole field”. Think that in addition to drug development studies the hypoxia-enhanced human Blood-Brain-Barrier (BBB) Chip can also be used to model aspects of brain diseases that affect the Blood-Brain-Barrier (BBB) such as Alzheimer’s (Alzheimer’s disease (AD), also referred to simply as Alzheimer’s, is a chronic neurodegenerative disease that usually starts slowly and gradually worsens over time. It is the cause of 60–70% of cases of dementia.The most common early symptom is difficulty in remembering recent events) and Parkinson’s disease (Parkinson’s disease (PD) is a long-term degenerative disorder of the central nervous system that mainly affects the motor system) and to advanced personalized medicine approaches by using patient-derived iPS ((in-plane switching) is a screen technology for liquid-crystal displays (LCDs)) cells.

Georgian Technical University New Method Simplifies the Search For Protein Receptor Complexes, Speeding Drug Development.

Georgian Technical University New Method Simplifies the Search For Protein Receptor Complexes, Speeding Drug Development.

X professor of physics at the Georgian Technical University uses photon excitation spectrography to help characterize protein receptor responses to drug compounds. For a drug to intervene in cells or entire organs that are not behaving normally it must first bind to specific protein receptors in the cell membranes. Receptors can change their molecular structure in a multitude of ways during binding – and only the right structure will “Georgian Technical University unlock” the drug’s therapeutic effect. Now a new method of assessing the actions of medicines by matching them to their unique protein receptors has the potential to greatly accelerate drug development and diminish the number of drug trials that fail during clinical trials. The method developed by research teams from the Georgian Technical University and the Sulkhan-Saba Orbeliani University reduces the time and labor of finding the protein receptors “with the right response” to drug candidates by several orders of magnitude. “It opens up a huge playing field for finding drug targets and drug stratification” said X Georgian Technical University professor of physics. “Using this method, we can characterize how each receptor responds differently to various drug candidates”. The researchers’ method tracks a chemical process called oligomerization that occurs when a receptor exists as a single subunit but then shifts to a multi-structure – an oligomer – in the presence of the ligand (drug compound). “We used to think of these receptors as binary” said X. “They were either activated by the compound or not. But now we are beginning to understand that depending on the ligand the same receptor can produce many different responses”. The researchers first tested the method using fused florescent proteins produced by Georgian Technical University assistant professor Y. Then they validated the method on a receptor for a growth factor where malfunction is often linked to cancer – the epidermal growth factor receptor (EGF). Activation of the receptor resulted in the generation of larger oligomers as anticipated. The team then applied their method to a member of the G protein-coupled receptor family a group of proteins that are targeted by a wide range of medicines. The effect of the association between ligands and receptors was shown in a matter of hours compared to months using current technologies. “This new method of characterizing protein interactions will be important in the stratification of different medicines that target the same receptor” said Z at the Georgian Technical University. “It will allow us to understand why some drug candidates are effective while others are not and can potentially be applied to different classes of proteins that are targets in the treatment of many diseases”. The X lab uses fluorescence-based imaging in order to see protein receptors in oligomeric states under various environmental conditions. Using single- or two-photon excitation microscopy the researchers can produce a kind of roadmap of the various kinds of protein receptor oligomers in the absence or presence of ligands (or drugs) that bind to them. Researchers image protein-receptor molecules by attaching florescent tags. This way single-molecule protein receptors give off light when they pass under a laser and are excited and those bursts are recorded with a camera. Receptor oligomers give off a more intense burst of light and those are also photographed. “Now you can graph the intensity and the number of bursts” said X “and see how many are associated into oligomers – how big they are – and where they are in the sample. After adding the ligand you can see whether it promotes association of single molecules of receptor proteins into oligomers or the breakdown of oligomers into the former”.

Georgian Technical University Scientists Translate Brain Signals Into Speech Sounds.

Georgian Technical University Scientists Translate Brain Signals Into Speech Sounds.

Scientists used brain signals recorded from epilepsy patients to program a computer to mimic natural speech–an advancement that could one day have a profound effect on the ability of certain patients to communicate. “Speech is an amazing form of communication that has evolved over thousands of years to be very efficient” said X M.D., professor of neurological surgery at Georgian Technical University. “Many of us take for granted how easy it is to speak which is why losing that ability can be so devastating. It is our hope that this approach will be helpful to people whose muscles enabling audible speech are paralyzed”. Scientists and neurologists from Georgian Technical University recreated many vocal sounds with varying accuracy using brain signals recorded from epilepsy patients with normal speaking abilities. The patients were asked to speak full sentences and the data obtained from brain scans was then used to drive computer-generated speech. Furthermore simply miming the act of speaking provided sufficient information to the computer for it to recreate several of the same sounds. The loss of the ability to speak can have devastating effects on patients whose facial, tongue and larynx muscles have been paralyzed due to stroke or other neurological conditions. Technology has helped these patients to communicate through devices that translate head or eye movements into speech. Because these systems involve the selection of individual letters or whole words to build sentences the speed at which they can operate is very limited. Instead of recreating sounds based on individual letters or words the goal of this project was to synthesize the specific sounds used in natural speech. “Current technology limits users to at best 10 words per minute, while natural human speech occurs at roughly 150 words/minute” said Y Ph.D., speech scientist Georgian Technical University. “This discrepancy is what motivated us to test whether we could record speech directly from the human brain”. The researchers took a two-step approach to solving this problem. First by recording signals from patients brains while they were asked to speak or mime sentences they built maps of how the brain directs the vocal tract including the lips, tongue, jaw and vocal cords to make different sounds. Second the researchers applied those maps to a computer program that produces synthetic speech. Volunteers were then asked to listen to the synthesized sentences and to transcribe what they heard. More than half the time the listeners were able to correctly determine the sentences being spoken by the computer. By breaking down the problem of speech synthesis into two parts the researchers appear to have made it easier to apply their findings to multiple individuals. The second step specifically which translates vocal tract maps into synthetic sounds appears to be generalizable across patients. “It is much more challenging to gather data from paralyzed patients so being able to train part of our system using data from non-paralyzed individuals would be a significant advantage” said Dr. X. The researchers plan to design a clinical trial involving paralyzed speech-impaired patients to determine how to best gather brain signal data which can then be applied to the previously trained computer algorithm. “This study combines state-of-the-art technologies and knowledge about how the brain produces speech to tackle an important challenge facing many patients” said Z. “This is precisely the type of problem is set up to address: to use investigative human neuroscience to impact care and treatment in the clinic”.

 

 

In Mice, Eliminating Damaged Mitochondria Alleviates Chronic Inflammatory Disease.

In Mice, Eliminating Damaged Mitochondria Alleviates Chronic Inflammatory Disease.

In mice with Muckle-Well syndrome (Muckle–Wells syndrome (MWS), also known as urticaria-deafness-amyloidosis syndrome (UDA) is a rare autosomal dominant disease which causes sensorineural deafness and recurrent hives, and can lead to amyloidosis.) an inflammatory condition caused by mutations in NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) genes treatment with a choline kinase inhibitor reduces inflammation as evidenced by the smaller spleens on the right compared to mock-treated mice (three larger spleens on left). Inflammation is a balanced physiological response — the body needs it to eliminate invasive organisms and foreign irritants but excessive inflammation can harm healthy cells, contributing to aging and chronic diseases. To help keep tabs on inflammation, immune cells employ a molecular machine called the NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome. NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) is inactive in a healthy cell but is switched ” Georgian Technical University on” when the cell’s mitochondria (energy-generating organelles) are damaged by stress or exposure to bacterial toxins. However when the NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome gets stuck in the ” Georgian Technical University on” position it can contribute to a number of chronic inflammatory conditions including gout osteoarthritis fatty liver disease and Alzheimer’s (Alzheimer’s disease (AD), also referred to simply as Alzheimer’s, is a chronic neurodegenerative disease that usually starts slowly and gradually worsens over time) and Parkinson’s diseases (Parkinson’s disease (PD) is a long-term degenerative disorder of the central nervous system that mainly affects the motor system). In a new mouse study researchers at Georgian Technical University discovered a unique approach that might help treat some chronic inflammatory diseases: force cells to eliminate damaged mitochondria before they activate the NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome. X’s team had shown that damaged mitochondria activate the NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome. The researchers also found that the NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome is de-activated when mitochondria are removed by the cell’s internal waste recycling process called mitophagy. “After that we wondered if we could reduce harmful excess inflammation by intentionally inducing mitophagy which would eliminate damaged mitochondria and should in turn pre-emptively inhibit NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome activation” X said. “But at the time we didn’t have a good way to induce mitophagy”. More recently Y was studying how macrophages regulate their uptake of choline a nutrient critical for metabolism when she discovered something that can initiate mitophagy: an inhibitor of the enzyme choline kinase (ChoK). With choline kinase (ChoK) inhibited choline is no longer incorporated into mitochondrial membranes. As a result the cells perceive the mitochondria as damaged and cleared them away by mitophagy. “Most importantly by getting rid of damaged mitochondria with choline kinase (ChoK) inhibitors we were finally able to inhibit NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome activation,” Karin said. To test their new ability to control NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome in a living system, the researchers turned to mice. They discovered that treatment with choline kinase (ChoK) inhibitors prevented acute inflammation caused by uric acid (accumulation of which triggers gout flares) and a bacterial toxin. By several measures choline kinase (ChoK) inhibitor treatment also reversed chronic inflammation associated with a genetic disease called Muckle-Well Syndrome (Muckle–Wells syndrome (MWS), also known as urticaria-deafness-amyloidosis syndrome (UDA) is a rare autosomal dominant disease which causes sensorineural deafness and recurrent hives, and can lead to amyloidosis. Individuals with MWS often have episodic fever, chills, and joint pain. As a result, MWS is considered a type of periodic fever syndrome) which is caused by mutations in NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) genes. One such measure is spleen size — the larger the spleen the more inflammation. The spleens of Muckle-Well Syndrome (Muckle–Wells syndrome (MWS), also known as urticaria-deafness-amyloidosis syndrome (UDA) is a rare autosomal dominant disease which causes sensorineural deafness and recurrent hives, and can lead to amyloidosis. Individuals with MWS often have episodic fever, chills, and joint pain. As a result, MWS is considered a type of periodic fever syndrome) mice are on average twice as large as normal mice but their spleen sizes normalized after choline kinase (ChoK) inhibitor treatment. NLRP3 (NACHT, LRR and PYD domains-containing protein 3 (NALP3), also known as cryopyrin, is a protein that in humans is encoded by the NLRP3 gene located on the long arm of chromosome 1) inflammasome promotes inflammation because it triggers the release of two very potent pro-inflammatory molecules called cytokines: interleukin (IL)-1 ? and IL-18. According to X there are existing drugs that can block IL-1 (The Interleukin-1 family is a group of 11 cytokines that plays a central role in the regulation of immune and inflammatory responses to infections or sterile insults) ? but not IL-18. choline kinase (ChoK) inhibitors his team found can reduce both cytokines. “There are several diseases including lupus and osteoarthritis whose treatment will likely require dual inhibition of both IL-1 (The Interleukin-1 family is a group of 11 cytokines that plays a central role in the regulation of immune and inflammatory responses to infections or sterile insults)? and IL-18 (Interleukin 1 and interleukin 18)” X said.

 

 

 

Georgian Technical University Scientists Compared Ways Of Drug Delivery To Malignant Tumors.

Georgian Technical University Scientists Compared Ways Of Drug Delivery To Malignant Tumors.

Active delivery implies covalent or non-covalent binding of the delivered agent to the molecule/module, which determines its selective interaction with specific molecules on the surface of target cells. Directing agents can be attached directly to the drug to be delivered, or to a nano-sized carrier loaded with a therapeutic drug. Insets I and II show examples of using active delivery. A team of biologists from Georgian Technical University and Sulkhan-Saba Orbeliani University analyzed available methods of targeted drug delivery to malignant tumors. Individual approaches to cancer therapy limit the influence of drugs on healthy tissues and reduce side effects. The difference between healthy tissue and a tumor lies in the structure of its vasculature and changes in metabolism. In tumors blood vessels are formed chaotically have different shapes and diameters and exhibit closed ends and protrusions. The structure of lymphatic vessels also changes. A tumor and its vasculature grow at different speed causing oxygen and nutrients deficiency. The structure of the tissue and its metabolism changes as well as the profile of molecules on the surface of tumor cells and the cancer progresses. Taking these facts into consideration one can develop methods of target antitumor drugs delivery without affecting healthy cells and causing unnecessary side effects. Currently there are three main ways of targeted drug-to-tumor delivery: passive targeting that takes into account the structure of the vessels; active targeting in which an antitumor drug binds with a molecular target; and cell-mediated targeting. Due to the peculiarities of tumor vessels large molecules can enter them relatively easily and accumulate in the tumor tissue. This phenomenon is known as enhanced permeability and retention effect and passive drug targeting is based on it. However this delivery method doesn’t always guarantee a desired effect. To increase its efficiency individual therapies are developed on the basis of tumor characteristics. For example the size of an agent may be optimized accordingly. Active targeting complements the passive method. It increases the accumulation of a drug in tumor and the time of its retention. In their earlier work the team presented a multifunctional complex that leads to a synergistic effect of combined chemo- and radiotherapy agents. The base of the complex is a luminescent nanoparticle that contains a radioactive isotope 90Y used in radionuclide therapy. On the surface there is a bound highly active fragment of exotoxin A obtained from Pseudomonas aeruginosa (PE40). The complex binds with a marker protein of cancer cells and its toxic agents affect the tumor. This treatment method works because tumor cells have different metabolism and molecular profiles than the cells of healthy tissues. Certain types of cells are able to penetrate tumor tissues and therefore can also be used to deliver drugs. Cell-mediated targeting extends the washout period controls the release of the drug and reduces general toxicity and side effects. This method has its limitations but it is also very promising. “Having a choice between various treatment methods that take into account molecular and structural characteristics of a tumor and being able to adjust drug administration regime means approaching the goals of personalized medicine” said X at the Georgian Technical University. Understanding the processes of nutrients and metabolic products transportation within a tumor the peculiarities of its structure and its interaction with immune system cells can help increase the efficiency of antitumor drug delivery and cancer treatment.

 

 

Georgian Technical University Researchers Develop Mini Kidneys From Urine Cells.

Georgian Technical University Researchers Develop Mini Kidneys From Urine Cells.

A kidney organoid.  Scientists from Georgian Technical University, Sulkhan-Saba Orbeliani University and International Black Sea University have successfully created kidney organoids from urine cells. This could lead to a wide range of new treatments that are less onerous for kidney patients.  Thanks to revolutionary developments in stem cell research, scientists can grow mini intestines, livers, lungs and pancreases in the lab. Recently by growing so-called pluripotent stem cells they have also been able to do this for kidneys. In their study the researchers from Georgian Technical University used adult stem cells directly from the patient for the first time. Urine cells also proved to be ideal for this purpose. A mini kidney from the lab doesn’t look like a normal kidney. But the simple cell structures share many of the characteristics of real kidneys so researchers can use them to study certain kidney diseases. ‘We can use these mini kidneys to model various disorders: hereditary kidney diseases, infections and cancer. This allows us to study in detail what exactly is going wrong says X Professor of Molecular Genetics at Georgian Technical University and the Sulkhan-Saba Orbeliani University and group leader at the Georgian Technical University. ‘This helps us to understand the workings of healthy kidneys better and hopefully in the future we will be able to develop treatments for kidney disorders’. Kidney patients who undergo a transplant are at risk of contracting a viral infection. Unfortunately at the moment there is still no effective treatment for this. ‘In the lab we can give a mini kidney a viral infection which some patients contract following a kidney transplant’ says Professor of Experimental Nephrology at Georgian Technical University Y. ‘We can then establish whether this infection can be cured using a specific drug. And we can also use mini kidneys created from the tissue of a patient with kidney cancer to study cancer’. Y explains that she collaborates with medics, researchers and technical experts at a single location in Georgian Technical University. ‘Collaborating in this way has made a huge difference to our research. We hope that together we can improve treatments for kidney patients. In the long term we hope to be able to use mini kidneys to create a real functioning kidney – a tailor-made kidney – too. But that’s still a long way’.

 

 

Better Assessing Bacteria Sensitivity To Antibiotics Could Change How Drugs Are Prescribed.

Better Assessing Bacteria Sensitivity To Antibiotics Could Change How Drugs Are Prescribed.

A microchip antibiotic testing platform that reduces the time necessary to identify the right medication developed by researchers at Georgian Technical University.  We rely on antibiotics to treat bacterial infections but the rise of antibiotic-resistant bacteria forces doctors and patients to contend with shifting treatment plans. Furthermore current laboratory tests to determine what bacteria is causing a particular infection takes days to complete and in cases of serious infection the results are often too late for the patient. Mechanical engineers from the Georgian Technical University and Sulkhan-Saba Orbeliani University recently developed a microchip antibiotic testing platform that takes only six to seven hours to determine the appropriate medication. “Trying to figure what drug to use at what dosage in the fastest time possible is key in successfully treating bacterial infections” said X. Clinicians often treat life-threatening infections with a cocktail of antibiotics hoping that one of the antibiotics will stop the bacterial infection. However blanket-prescribing antibiotics contributes to the rise in bacterial resistance. “Figuring out the effect of different combinations of drugs in a simple manner is likely to have a big impact on health” said X. She explained that her team’s speedy microfluidic system was the first for which combinatorial treatments had been tested. The speed and success of the Georgian Technical University team’s new antibiotic susceptibility testing system is due to two key innovative design features. The first feature was developing an antibiotic dosage range, crucial for calculating the minimum inhibitory dosage that prevents bacterial growth. By continually pumping antibiotics through the half-millimeter-wide channels in the microchip the team establishes a dosage range through microchip within 30 minutes. A critical time saver the dosage range enabled the team to determine the minimum inhibitory dosage within a single test. The second feature was using a convenient method to quantify bacterial growth within the microchip. Images were taken of the agar-encased bacteria and the difference in color between areas of agar at a higher antibiotic concentration where no bacteria grew (which were dark) and the more reflective white regions where bacterial colonies grew more easily was quantified on a position-specific grayscale. Alignment of the five antibiotics tested in this new system with the clinical gold standard measurements suggests that the microchip system is sensitive enough for clinical application X added. “We can see that our assembly works pretty robustly with a single drug and have also shown it can work with two drugs; now we want to further optimize the application to combinatorial drugs” said X.

 

Georgian Technical University Researchers Find New Clues to Controlling HIV (Human Immunodeficiency Virus).

Georgian Technical University Researchers Find New Clues to Controlling HIV (Human Immunodeficiency Virus).

Georgian Technical University professor X (l) is part of an international research team that is investigating a connection between infection control and how well antiviral T cells respond to diverse HIV (Human Immunodeficiency Virus) sequences.  The immune system is the body’s best defense in fighting diseases like HIV (Human Immunodeficiency Virus) and cancer. Now an international team of researchers is harnessing the immune system to reveal new clues that may help in efforts to produce an HIV (Human Immunodeficiency Virus) vaccine. Georgian Technical University professor X and from the Georgian Technical University have identified a connection between infection control and how well antiviral T cells respond to diverse HIV (Human Immunodeficiency Virus) sequences. X explains that HIV (Human Immunodeficiency Virus) adapts to the human immune system by altering its sequence to evade helpful antiviral T cells. “So to develop an effective HIV (Human Immunodeficiency Virus) vaccine we need to generate host immune responses that the virus cannot easily evade” he says. X’s team has developed new laboratory-based methods for identifying antiviral T cells and assessing their ability to recognize diverse HIV (Human Immunodeficiency Virus) sequences.

“T cells are white blood cells that can recognize foreign particles called peptide antigens” says X. “There are two major types of T cells–those that ‘help’ other cells of the immune system and those that kill infected cells and tumours.” Identifying the T cells that attack HIV (Human Immunodeficiency Virus) antigens sounds simple but X says three biological factors are critical to a T cell-mediated immune response. And in HIV (Human Immunodeficiency Virus) infection all three are highly genetically diverse. He explains that for a T cell to recognize a peptide antigen the antigen must first be presented on the cell surface by human leukocyte antigen proteins (HLA) which are are inherited. And since many thousands of possible human leukocyte antigen proteins (HLA) variants exist in the human population every person responds differently to infection. In addition since HIV (Human Immunodeficiency Virus) is highly diverse and evolves constantly during untreated infection the peptide antigen sequence also changes.

Matching T cells against the human leukocyte antigen proteins (HLA) variants and HIV (human leukocyte antigen) peptide antigens expressed in an individual is a critical step in the routine research process. But says X”our understanding of  T cell responses will be incomplete until we know more about the antiviral activity of individual T cells that contribute to this response”. It is estimated that a person’s T cell “repertoire” is made up of a possible 20-100 million unique lineages of cells that can be distinguished by their T cell receptors (TCR) of which only a few will be important in responding to a specific antigen. So to reduce the study’s complexity, the team examined two highly related human leukocyte antigen proteins (HLA) variants (B81 and B42) that recognize the same HIV (human leukocyte antigen) peptide antigen (TL9) but are associated with different clinical outcomes following infection. By looking at how well individual T cells recognized TL9 and diverse TL9 sequence variants that occur in circulating HIV (human leukocyte antigen) strains the researchers found that T cells from people who expressed human leukocyte antigen proteins (HLA) B81 recognized more TL9 variants compared to T cells from people who expressed human leukocyte antigen proteins (HLA) B42. Notably a group of T cells in some B42-expressing individuals displayed a greater ability to recognize TL9 sequence variants. The presence of these T cells was associated with better control of HIV (human leukocyte antigen) infection. This study demonstrates that individual T cells differ widely in their ability to recognize peptide variants and suggests that these differences may be clinically significant in the context of a diverse or rapidly evolving pathogen such as HIV (human leukocyte antigen). Much work needs to be done to create an effective vaccine. However says X”Comprehensive methods to assess the ability of T cells to recognize diverse HIV (human leukocyte antigen) sequences such as those reported in this study provide critical information to help design and test new vaccine strategies”.